Food costs for Australian restaurants have increased sharply over the past two years. Higher input costs mean the gap between reported and actual inventory value can be significant if records are not maintained properly. The ATO uses inventory figures to assess the accuracy of cost of goods sold (COGS) and gross profit, which directly affect your taxable income.
When inventory records are wrong, two things happen. If stock is overstated, reported profit appears artificially high. If stock is understated, profit appears lower than it actually was. Both create compliance risk. The ATO has increased scrutiny of hospitality sector tax returns in recent years, particularly around COGS accuracy and stocktake methodology.
Restaurant and Catering Australia has noted that back-of-house operational data management is becoming a priority area for multi-site operators and independent venues alike, especially as software adoption increases and manual processes become easier to audit.
Operators who treat EOFY as a structured operational checkpoint rather than a last-minute accounting task consistently report better financial visibility and fewer reconciliation problems throughout the year.
The ATO does not mandate a specific stocktake format for restaurants, but it expects records to be accurate, consistent, and capable of supporting the figures you report. That means your inventory documentation needs to demonstrate how you arrived at your closing stock figure and how that figure connects to the COGS calculation in your tax return.
Specifically, the ATO expects:
If you are using a weighted average cost, FIFO, or any other valuation method, that method must be applied consistently. Switching methods between periods without documentation creates a reconciliation problem that is difficult to explain in an audit.
Before 30 June, the following records need to be in order and accessible. These are not optional if the ATO asks questions.
Every stocktake count should clearly show the product name, quantity on hand, unit of measure, and the date the count was completed. Counts taken on different days should be clearly labelled. An undated count with no methodology note creates doubt about its accuracy.
Every invoice and purchase order should correspond to a recorded delivery in your system. If you received stock that does not appear in your purchase records, your inventory figures will not reconcile. Scan and store invoices as they arrive, not at the end of the month.
The ATO expects actual wastage figures, not estimates. Spoilage, breakage, and over-preparation losses need to be logged at the time they occur, with the product name, quantity, and reason. An adjustment log created at the end of the year from memory will not hold up under scrutiny.
Multi-site operators must document every stock movement between venues. A transfer that reduces inventory at one location and increases it at another needs a paper trail. Without it, your figures will not balance and neither will your tax position.
Write down the method you use and apply it consistently. If you value closing stock at cost using weighted average prices, document that. If a new product was added mid-year at a different price tier, note how that was handled.
Most compliance issues in Australian restaurants do not come from deliberate errors. They come from operational habits that create gaps in the record.
A stocktake completed on 2 July and backdated to 30 June is not a compliant closing stock figure. Timing matters. The count needs to happen on or before 30 June, following the same process used throughout the year.
Invoices from June deliveries that have not been entered by the time you run your EOFY figures will understate your purchases and overstate your closing stock. Both distort COGS. Reconcile your supplier statements against your purchase records before closing out the period.
A kitchen that discards food without logging it has no defensible waste figure. If your waste log is blank for six months and then suddenly shows significant adjustments in June, it will raise questions. Build the habit of logging waste daily, not quarterly.
If one team counts in kilograms and another counts in portions, your stocktake figures cannot be compared across periods or locations. Standardise the unit of measure for every product category and train all staff who participate in counts.
Obsolete or unsellable stock that remains on your books at full value overstates your inventory. Review dead stock in the weeks before EOFY and document any write-offs with the reason and the value removed.
This is the part that matters most for compliance. Your COGS figure, the number that determines your gross profit and taxable income, is calculated directly from your inventory records:
COGS = Opening Stock + Purchases during the period, minus Closing Stock
If your closing stock is too high, your COGS appears lower than it should be, which makes your gross profit look higher. The ATO will then expect you to pay tax on a higher profit figure than your kitchen actually generated.
If your closing stock is understated, COGS looks inflated, profit appears lower, and your tax bill shrinks. This is the direction more likely to attract ATO attention.
The integrity of every number between the top line of your P&L and your taxable income depends on the accuracy of your stocktake. This is why inventory control is a compliance issue, not just an operational one.
Manual stocktake processes using paper count sheets and spreadsheets create the conditions for most of the errors described above. Data entry mistakes, timing inconsistencies, and version control problems compound over time, particularly in high-volume or multi-site operations.
Modern inventory platforms now allow restaurants to track stock movement in real time, compare theoretical usage against actual usage automatically, flag supplier price changes as they occur, and reduce the manual reconciliation effort required at EOFY.
StockTake Online's restaurant stock control system connects purchase ordering, delivery recording, recipe costing, and stocktake counts in one platform. When an invoice is scanned and processed, stock levels update automatically and any price changes are flagged before they affect your cost calculations. This means that by the time EOFY arrives, the reconciliation work is largely done rather than starting from scratch in the final week of June.
Operators preparing for EOFY can also access free EOFY inventory tools, including downloadable checklists and variance calculators, without needing a full system in place first.
Running EOFY inventory across multiple venues introduces complexity that single-site operators do not face. Different locations often operate with different managers, different suppliers, different counting schedules, and sometimes entirely different processes for recording adjustments.
The result is that figures from two venues cannot be compared, consolidated, or relied upon to produce a clean group-level tax position.
Common multi-site issues include:
Multi-location groups that handle EOFY well in 2026 have standardised counting procedures across all sites, centralised reporting structures that allow a single view of group inventory, and clear accountability for who is responsible for closing stock at each venue by what date.
Consider a Melbourne restaurant group operating four venues across different suburbs. Without a centralised system, each venue manager submits stocktake figures on different days using different formats. The finance team spends the final week of June manually reconciling transfers and trying to match invoices to deliveries across four separate spreadsheets. With a shared platform, the same group can close EOFY in a fraction of the time because the data is already in one place.
The operators who manage EOFY cleanly do not start in the last week of June. They begin a structured review process in early June and complete it in stages.
This staged approach reduces the time pressure on the final count and increases the accuracy of the result.
Before 30 June, confirm the following have been completed:
Download a ready-to-use version of this checklist along with a variance calculator from STO's free restaurant inventory resources page.
The strongest operators going into EOFY 2026 are not necessarily those with the most advanced technology. They are the ones who have built consistent habits into their daily operations.
Good inventory control in 2026 means counting stock at the same time every period, recording every delivery on the day it arrives, updating recipe costs when a supplier price changes, and reviewing the gap between theoretical and actual food cost every week, not every quarter.
When these habits are in place, EOFY becomes a confirmation exercise rather than a rescue operation. The data is already there. The reconciliation is already done. The compliance record practically writes itself.
For operators who are not yet at that point, the best time to start was months ago. The second best time is now, before 30 June, while there is still time to fix the gaps.
The ATO requires restaurants to keep stocktake records showing product names, quantities, units of measure, and dates. You also need supplier invoices and purchase orders that match your recorded stock movements, adjustment logs for waste and spoilage, transfer records for multi-site operations, and documentation of the valuation method used to calculate closing stock. These records support your COGS figure, which feeds directly into your taxable income calculation.
Your closing inventory figure determines your COGS, which determines your gross profit, which determines your taxable income. If the closing stock figure is wrong, every downstream number is wrong. The ATO uses these figures to assess whether your reported profit is accurate. Inaccurate records create compliance risk and can trigger audit activity, particularly if there are unexplained discrepancies between purchases and the inventory figure you report.
High-volume venues should count stock weekly or fortnightly. Smaller operations can manage with monthly counts if waste and delivery records are maintained daily. Regardless of frequency, a detailed, documented stocktake must be completed on or before 30 June to produce a defensible closing stock figure for EOFY. Backdating a count completed after 30 June is not compliant.
The most common causes are stocktakes completed too late or outside the normal counting schedule, missing invoices from June deliveries, waste that was never logged during the year, and staff using different counting methods or units of measure across shifts or locations. Most of these problems are preventable if the right processes are in place before the final week of June.
Yes, for single-site operators with stable menus and a disciplined recording process, spreadsheets can produce compliant records. The limitation is version control and human error. When supplier prices change, when products are added or removed, or when multiple people are entering data, spreadsheets become unreliable. As operation size and complexity increase, the risk of a compliance gap from a spreadsheet error also increases.
COGS is calculated as opening stock plus purchases during the period, minus closing stock. The closing stock figure comes directly from your EOFY stocktake. If that figure is inaccurate, your COGS is inaccurate, and your taxable income is inaccurate. This is the direct line between your stockroom and your tax return, and it is why the ATO takes inventory record quality seriously.
StockTake Online offers free EOFY preparation tools including inventory checklists and variance calculators through the STO free tools page. For operators who need a full back-of-house system connecting purchases, stocktakes, and recipe costing, the STO restaurant stock control platform is available with no upfront cost to explore.